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EPIC microarray
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1.3k
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ChAMP functional normalization error "subscript out of bounds"
champ
epic microarray
normalization
minfi
6.1 years ago
Laura
• 0
0
votes
2
replies
1.2k
views
Error in read.metharray.exp
minfi
epic microarray
bioconductor
updated 23 months ago by
Lucy
• 0 • written 6.2 years ago by
c.sae-lee2
• 0
0
votes
2
replies
2.1k
views
Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor
methylation
epic microarray
champ
6.4 years ago
csappleby-mallinder1
• 0
0
votes
4
replies
1.7k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.3 years ago
nhejazi
• 0
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.3 years ago
chelsey.ju
• 0
0
votes
0
replies
1.5k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads
methylation
illumina
epic microarray
7.8 years ago
rasii
• 0
1
vote
7
replies
2.9k
views
dmpFinder return value (minfi)
minfi
dmpfinder
dmp
illuminahumanmethylationepicanno.ilmn10b.hg19
epic microarray
updated 8.0 years ago by
James W. MacDonald
66k • written 8.0 years ago by
Biologist
▴ 110
0
votes
1
reply
1.6k
views
Error in Matrix
minfi
methylation
EPIC microarray
illumina
updated 8.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.2 years ago by
rasii
• 0
8 results • Page
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Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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