Bioconductor EPIC microarray

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champ epic microarray normalization minfi

6.5 years ago Laura • 0

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minfi epic microarray bioconductor

updated 2.3 years ago by Lucy • 0 • written 6.7 years ago by c.sae-lee2 • 0

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bioconductor methylation epic microarray champ

6.8 years ago csappleby-mallinder1 • 0

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methylation epic microarray minfi methylationepic

7.7 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

7.7 years ago chelsey.ju • 0

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rnbeads methylation illumina epic microarray

8.2 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by Biologist ▴ 120

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minfi methylation EPIC microarray illumina

updated 8.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.6 years ago by rasii • 0

8 results • Page 1 of 1

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Answer: Is it possible to parallelise saveHDF5SummarizedExperiment by Hervé Pagès 16k

Hi Stefano, Unfortunately HDF5 doesn't support concurrent writing so parallelising is not an option. A few things that maybe could help: …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

It's a simple two-liner in [getsrc.sh][1] ``` awk -F'\t' 'BEGIN {OFS=FS} {if($3 != $11 && $11 != "-") $3 = $11; print $0}' gene_info > tmp…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Thanks for changing this! Just to confirm I understood it correctly: the `Symbol` will (still) be used, and will be replaced by `Symbol fro…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by James W. MacDonald 67k

OK, there are 157 MT genes in maybe 6 species for which the symbols are not correct, and I added code to swap the 'Symbol from nomenclature…

Comment: Tximport with RSEM error by Michael Love 42k

Would you post a new issue with example code and maybe what the files look like?

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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

A: GOseq analysis with only upregulated or downregulated genes

Answer: Properly constructing a hypergeometric test

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