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EPIC microarray
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1.5k
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ChAMP functional normalization error "subscript out of bounds"
champ
epic microarray
normalization
minfi
6.5 years ago
Laura
• 0
0
votes
2
replies
1.4k
views
Error in read.metharray.exp
minfi
epic microarray
bioconductor
updated 2.4 years ago by
Lucy
• 0 • written 6.7 years ago by
c.sae-lee2
• 0
0
votes
2
replies
2.2k
views
Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
bioconductor
methylation
epic microarray
champ
6.9 years ago
csappleby-mallinder1
• 0
0
votes
4
replies
1.9k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.7 years ago
nhejazi
• 0
0
votes
0
replies
1.2k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.8 years ago
chelsey.ju
• 0
0
votes
0
replies
1.7k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads
methylation
illumina
epic microarray
8.2 years ago
rasii
• 0
1
vote
7
replies
3.2k
views
dmpFinder return value (minfi)
minfi
dmpfinder
dmp
illuminahumanmethylationepicanno.ilmn10b.hg19
epic microarray
updated 8.4 years ago by
James W. MacDonald
67k • written 8.4 years ago by
Biologist
▴ 120
0
votes
1
reply
1.8k
views
Error in Matrix
minfi
methylation
EPIC microarray
illumina
updated 8.6 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.6 years ago by
rasii
• 0
8 results • Page
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Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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